Package: MixMashNet 1.1.0

Maria De Martino

MixMashNet: Tools for Multilayer and Single Layer Network Modeling

Estimation and bootstrap utilities for single layer and multilayer Mixed Graphical Models, including functions for centrality, bridge metrics, membership stability, and plotting (De Martino et al. (2026) <doi:10.48550/arXiv.2602.05716>).

Authors:Maria De Martino [aut, cre], Caterina Gregorio [aut], Adrien Perigord [ctb], Hudson Golino [ctb], Jonas Haslbeck [ctb]

MixMashNet_1.1.0.tar.gz
MixMashNet_1.1.0.zip(r-4.7-any)MixMashNet_1.1.0.zip(r-4.6-any)MixMashNet_1.1.0.zip(r-4.5-any)
MixMashNet_1.1.0.tgz(r-4.6-any)MixMashNet_1.1.0.tgz(r-4.5-any)
MixMashNet_1.1.0.tar.gz(r-4.7-any)MixMashNet_1.1.0.tar.gz(r-4.6-any)
MixMashNet_1.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
MixMashNet/json (API)

# Install 'MixMashNet' in R:
install.packages('MixMashNet', repos = c('https://arcbiostat.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/arcbiostat/mixmashnet/issues

Pkgdown/docs site:https://arcbiostat.github.io

Datasets:
  • bacteremia - Bacteremia example dataset for single layer network analysis
  • nhanes - NHANES-derived dataset for multilayer network analysis

On CRAN:

Conda:

4.41 score 2 stars 2 scripts 336 downloads 12 exports 183 dependencies

Last updated from:e842da38a3. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK204
source / vignettesOK238
linux-releaseOK217
macos-releaseOK271
macos-oldrelOK297
windows-develOK160
windows-releaseOK163
windows-oldrelOK138
wasm-releaseOK143

Exports:bridge_metricsbridge_metrics_excludedcommunity_scoresfind_bridge_communitiesfind_bridge_layersget_centralityget_edgeslayer_slicemembershipStabmixMNmultimixMNupdate_palette

Dependencies:abindbackportsbase64encbitbit64bootbroombslibcachemcarcarDatacheckmateclassclicliprclueclustercocorcodacodetoolscolorspacecorpcorcorrplotcowplotcpp11crayondata.tabledendextendDerivdigestdoBydoParalleldplyre1071EGAneteigenmodelellipseevaluatefarverfastmapfdrtoolfontawesomeforcatsforeachforecastforeignFormulafracdifffsfuturefuture.applygdatagenericsGGallyggplot2ggpubrggrepelggsciggsignifggstatsglassoglassoFastglmnetglobalsglueGPArotationgridExtragtablegtoolshavenhighrHmischmshtmlTablehtmltoolshtmlwidgetsigraphisobanditeratorsjomojpegjquerylibjsonliteknitrlabelinglatticelavaanlifecyclelistenvlme4lmtestmagrittrMASSMatrixMatrixModelsmemoisemgcvmgmmicemimeminqamitmlmnormtmodelrnetworknetworktoolsnlmenloptrnnetnnlsnumDerivordinalpanparallellypatchworkpbapplypbivnormpbkrtestpillarpkgconfigplotrixplyrpngpolynomprettyunitsprogressprogressrproxypsychpurrrqgraphquadprogquantregR.methodsS3R.ooR.utilsR6rappdirsrbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreadrreformulasreshape2rlangrmarkdownrpartrstatixrstudioapiS7sassscalessemPlotshapesmacofsnaSparseMstatnet.commonstringistringrsurvivaltibbletidyrtidyselecttimeDatetinytextzdbucminfurcautf8vctrsviridisviridisLitevroomweightswithrwordcloudxfunyamlzoo

Readme and manuals

Help Manual

Help pageTopics
Tools for Multilayer and Single Layer Network ModelingMixMashNet-package MixMashNet
Bacteremia example dataset for single layer network analysisbacteremia
Bridge metrics for nodes across communitiesbridge_metrics
Bridge metrics for nodes excluded from communitiesbridge_metrics_excluded
Compute community scores from a fitted MixMashNet modelcommunity_scores
Bridge profiles of a node across communitiesfind_bridge_communities
Bridge profiles of a node across layersfind_bridge_layers
Extract node-level centrality indicesget_centrality get_centrality.mixMN_fit get_centrality.multimixMN_fit
Extract edge-level summariesget_edges get_edges.mixMN_fit get_edges.multimixMN_fit
Extract a single layer from a multilayer MixMashNet objectlayer_slice layer_slice.multimixMN_fit
Node stability from bootstrap community assignmentsmembershipStab
Estimate single layer MGM network with bootstrap centrality, bridge metrics, clustering, and (optionally) community score loadingsmixMN
Multilayer MGM with bootstrap, intra/interlayer metrics, and quantile regionsmultimixMN
NHANES-derived dataset for multilayer network analysisnhanes
Plot method for single layer MixMashNet objectsplot.mixMN_fit
Plot method for multilayer MixMashNet objectsplot.multimixMN_fit
Print method for single layer MixMashNet objectsprint.mixMN_fit
Print method for multilayer MixMashNet objectsprint.multimixMN_fit
Summarize top intralayer edges for single-layer MixMashNet fitssummary.mixMN_fit
Summarize top interlayer edges for multilayer MixMashNet fitssummary.multimixMN_fit
Update community and layer color palettes in MixMashNet objectsupdate_palette update_palette.mixMN_fit update_palette.multimixMN_fit