Package: MixMashNet 1.1.0

Maria De Martino

MixMashNet: Tools for Multilayer and Single Layer Network Modeling

Estimation and bootstrap utilities for single layer and multilayer Mixed Graphical Models, including functions for centrality, bridge metrics, membership stability, and plotting (De Martino et al. (2026) <doi:10.48550/arXiv.2602.05716>).

Authors:Maria De Martino [aut, cre], Caterina Gregorio [aut], Adrien Perigord [ctb], Hudson Golino [ctb], Jonas Haslbeck [ctb]

MixMashNet_1.1.0.tar.gz
MixMashNet_1.1.0.zip(r-4.7-any)MixMashNet_1.1.0.zip(r-4.6-any)MixMashNet_1.1.0.zip(r-4.5-any)
MixMashNet_1.1.0.tgz(r-4.6-any)MixMashNet_1.1.0.tgz(r-4.5-any)
MixMashNet_1.1.0.tar.gz(r-4.7-any)MixMashNet_1.1.0.tar.gz(r-4.6-any)
MixMashNet_1.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
MixMashNet/json (API)

# Install 'MixMashNet' in R:

install.packages('MixMashNet', repos = c('https://arcbiostat.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/arcbiostat/mixmashnet/issues

Pkgdown/docs site:https://arcbiostat.github.io

Datasets:

bacteremia - Bacteremia example dataset for single layer network analysis
nhanes - NHANES-derived dataset for multilayer network analysis

On CRAN:

4.45 score 2 stars 2 scripts 397 downloads 12 exports 200 dependencies

Last updated from:e842da38a3. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	262
source / vignettes	OK	265
linux-release-x86_64	OK	193
macos-release-arm64	OK	169
macos-oldrel-arm64	OK	171
windows-devel	OK	173
windows-release	OK	195
windows-oldrel	OK	176
wasm-release	OK	183

Exports:bridge_metrics bridge_metrics_excluded community_scores find_bridge_communities find_bridge_layers get_centrality get_edges layer_slice membershipStab mixMN multimixMN update_palette

Dependencies:abind arm backports base64enc BH bit bit64 boot broom bslib cachem car carData checkmate class cli clipr clue cluster cocor coda codetools colorspace corpcor corrplot cowplot cpp11 crayon data.table dendextend Deriv digest doBy doParallel dplyr e1071 EGAnet eigenmodel ellipse evaluate farver fastmap fdrtool fontawesome forcats foreach forecast foreign Formula fracdiff fs future future.apply gdata generics GGally ggplot2 ggpubr ggrepel ggsci ggsignif ggstats glasso glassoFast glmnet globals glue GPArotation gridExtra gtable gtools haven highr Hmisc hms htmlTable htmltools htmlwidgets igraph isoband iterators jomo jpeg jquerylib jsonlite knitr kutils labeling lattice lavaan lifecycle lisrelToR listenv lme4 lmtest magrittr MASS Matrix MatrixModels memoise mgcv mgm mi mice mime minqa mitml mnormt modelr mvtnorm network networktools nlme nloptr nnet nnls numDeriv OpenMx openxlsx ordinal pan parallelly patchwork pbapply pbivnorm pbkrtest pillar pkgconfig plotrix plyr png polynom prettyunits progress progressr proxy psych purrr qgraph quadprog quantreg R.methodsS3 R.oo R.utils R6 rappdirs rbibutils RColorBrewer Rcpp RcppArmadillo RcppEigen RcppParallel Rdpack readr reformulas reshape2 rlang rmarkdown rockchalk rpart rpf rstatix rstudioapi RUnit S7 sass scales sem semPlot shape smacof sna SparseM StanHeaders statnet.common stringi stringr survival tibble tidyr tidyselect timeDate tinytex tzdb ucminf urca utf8 vctrs viridis viridisLite vroom weights withr wordcloud xfun XML xtable yaml zip zoo

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Tools for Multilayer and Single Layer Network Modeling	MixMashNet-package MixMashNet
Bacteremia example dataset for single layer network analysis	bacteremia
Bridge metrics for nodes across communities	bridge_metrics
Bridge metrics for nodes excluded from communities	bridge_metrics_excluded
Compute community scores from a fitted MixMashNet model	community_scores
Bridge profiles of a node across communities	find_bridge_communities
Bridge profiles of a node across layers	find_bridge_layers
Extract node-level centrality indices	get_centrality get_centrality.mixMN_fit get_centrality.multimixMN_fit
Extract edge-level summaries	get_edges get_edges.mixMN_fit get_edges.multimixMN_fit
Extract a single layer from a multilayer MixMashNet object	layer_slice layer_slice.multimixMN_fit
Node stability from bootstrap community assignments	membershipStab
Estimate single layer MGM network with bootstrap centrality, bridge metrics, clustering, and (optionally) community score loadings	mixMN
Multilayer MGM with bootstrap, intra/interlayer metrics, and quantile regions	multimixMN
NHANES-derived dataset for multilayer network analysis	nhanes
Plot method for single layer MixMashNet objects	plot.mixMN_fit
Plot method for multilayer MixMashNet objects	plot.multimixMN_fit
Print method for single layer MixMashNet objects	print.mixMN_fit
Print method for multilayer MixMashNet objects	print.multimixMN_fit
Summarize top intralayer edges for single-layer MixMashNet fits	summary.mixMN_fit
Summarize top interlayer edges for multilayer MixMashNet fits	summary.multimixMN_fit
Update community and layer color palettes in MixMashNet objects	update_palette update_palette.mixMN_fit update_palette.multimixMN_fit