{ "_id": "6acf4e40d9de2f3f33fcaa73", "Package": "MixMashNet", "Title": "Tools for Multilayer and Single Layer Network Modeling", "Version": "1.1.0", "Authors@R": "c(person(\"Maria\", \"De Martino\", email = \"maria.demartino@uniud.it\", role = c(\"aut\",\"cre\")),\nperson(\"Caterina\", \"Gregorio\", email = \"caterina.gregorio@ki.se\", role = \"aut\"),\nperson(\"Adrien\", \"Perigord\", email = \"adrien.perigord@ki.se\", role = \"ctb\"),\nperson(\"Hudson\", \"Golino\", email = \"hfg9s@virginia.edu\", role = \"ctb\"),\nperson(\"Jonas\", \"Haslbeck\", email = \"jonashaslbeck@gmail.com\", role = \"ctb\"))", "Maintainer": "Maria De Martino ", "Description": "Estimation and bootstrap utilities for single layer and\nmultilayer Mixed Graphical Models, including functions for\ncentrality, bridge metrics, membership stability, and plotting\n(De Martino et al. (2026) ).", "License": "AGPL (>= 3)", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.3.3", "URL": "https://arcbiostat.github.io/MixMashNet/", "BugReports": "https://github.com/ARCbiostat/MixMashNet/issues", "Config/pak/sysreqs": "cmake libglpk-dev make libicu-dev libjpeg-dev\nlibpng-dev libuv1-dev libxml2-dev libssl-dev libx11-dev\nzlib1g-dev", "Repository": "https://arcbiostat.r-universe.dev", "Date/Publication": "2026-06-16 19:38:22 UTC", "RemoteUrl": "https://github.com/arcbiostat/mixmashnet", "RemoteRef": "HEAD", "RemoteSha": "e842da38a3a476fb88bb5361f13b6c85fb2434b0", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-14 08:48:47 UTC", "User": "root" }, "Author": "Maria De Martino [aut, cre],\nCaterina Gregorio [aut],\nAdrien Perigord [ctb],\nHudson Golino [ctb],\nJonas Haslbeck [ctb]", "_user": "arcbiostat", "_type": "src", "_file": "MixMashNet_1.1.0.tar.gz", "_fileid": "https://r2.ropensci.org/4f54085e69de6ff94591c0d2220aa083729543726326141e10df421f1c8ff49c", "_filesize": 2836315, "_sha256": "4f54085e69de6ff94591c0d2220aa083729543726326141e10df421f1c8ff49c", "_expires": "2027-01-22T09:41:18.000Z", "_created": "2026-10-14T08:48:47.000Z", "_published": "2026-10-14T09:41:20.745Z", "_buildurl": "https://github.com/r-universe/arcbiostat/actions/runs/38537310877", "_status": "success", "_host": "GitHub-Actions", "_jobs": [ { "job": 115764997431, "time": 204, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11880922586" }, { "job": 115764997424, "time": 217, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11881437167" }, { "job": 115764997280, "time": 297, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11883691490" }, { "job": 115764997345, "time": 271, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11883377716" }, { "job": 115763383175, "time": 238, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11880313692" }, { "job": 115764997466, "time": 143, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11880562888" }, { "job": 115764997360, "time": 160, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11880807747" }, { "job": 115764997495, "time": 138, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11880877965" }, { "job": 115764997457, "time": 163, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11880244355" } ], "_upstream": "https://github.com/arcbiostat/mixmashnet", "_commit": { "id": "e842da38a3a476fb88bb5361f13b6c85fb2434b0", "author": "Maria De Martino ", "committer": "Maria De Martino ", "message": "Small fixes\n", "time": 1781638702 }, "_maintainer": { "name": "Maria De Martino", "email": "maria.demartino@uniud.it", "login": "mariadmm96", "description": "", "uuid": 187270082 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.1", "role": "Depends" }, { "package": "mgm", "role": "Imports" }, { "package": "igraph", "role": "Imports" }, { "package": "qgraph", "role": "Imports" }, { "package": "colorspace", "role": "Imports" }, { "package": "future.apply", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "EGAnet", "role": "Imports" }, { "package": "networktools", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "magrittr", "role": "Imports" }, { "package": "rlang", "role": "Imports" }, { "package": "tibble", "role": "Imports" }, { "package": "tidyr", "role": "Imports" }, { "package": "patchwork", "role": "Imports" }, { "package": "progressr", "role": "Imports" } ], "_owner": "arcbiostat", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-42", "n": 6 }, { "week": "2025-43", "n": 1 }, { "week": "2025-44", "n": 5 }, { "week": "2025-45", "n": 3 }, { "week": "2025-46", "n": 2 }, { "week": "2025-47", "n": 6 }, { "week": "2025-48", "n": 2 }, { "week": "2025-49", "n": 6 }, { "week": "2025-50", "n": 2 }, { "week": "2025-51", "n": 8 }, { "week": "2026-02", "n": 4 }, { "week": "2026-03", "n": 5 }, { "week": "2026-04", "n": 6 }, { "week": "2026-05", "n": 4 }, { "week": "2026-06", "n": 9 }, { "week": "2026-07", "n": 4 }, { "week": "2026-08", "n": 5 }, { "week": "2026-09", "n": 2 }, { "week": "2026-10", "n": 2 }, { "week": "2026-11", "n": 1 }, { "week": "2026-15", "n": 1 }, { "week": "2026-16", "n": 5 }, { "week": "2026-18", "n": 3 }, { "week": "2026-23", "n": 1 }, { "week": "2026-24", "n": 1 }, { "week": "2026-25", "n": 2 } ], "_tags": [], "_stars": 2, "_contributors": [ { "user": "mariadmm96", "count": 106, "uuid": 187270082 } ], "_userbio": { "uuid": 206832760, "type": "organization", "name": "ARCbiostat", "followers": 4 }, "_downloads": { "count": 336, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/MixMashNet" }, "_devurl": "https://github.com/arcbiostat/mixmashnet", "_pkgdown": "https://arcbiostat.github.io/MixMashNet/", "_searchresults": 2, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/MixMashNet.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md" ], "_homeurl": "https://github.com/arcbiostat/mixmashnet", "_realowner": "arcbiostat", "_cranurl": true, "_releases": [ { "version": "0.6.0", "date": "2026-03-03" }, { "version": "1.0.0", "date": "2026-04-30" }, { "version": "1.1.0", "date": "2026-06-16" } ], "_exports": [ "bridge_metrics", "bridge_metrics_excluded", "community_scores", "find_bridge_communities", "find_bridge_layers", "get_centrality", "get_edges", "layer_slice", "membershipStab", "mixMN", "multimixMN", "update_palette" ], "_datasets": [ { "name": "bacteremia", "title": "Bacteremia example dataset for single layer network analysis", "object": "bacteremia", "class": [ "data.frame" ], "fields": [ "AGE", "WBC", "NEU", "HGB", "PLT", "CRP", "APTT", "FIB", "CREA", "BUN", "GLU", "ALAT", "GBIL", "ALB", "SEX", "BloodCulture" ], "rows": 7420, "table": true, "tojson": true }, { "name": "nhanes", "title": "NHANES-derived dataset for multilayer network analysis", "object": "nhanes", "class": [ "data.frame" ], "fields": [ "TotChol", "HDL", "Creatinine", "UricAcid", "ALT", "AST", "GGT", "Bilirubin", "Albumin", "TotProtein", "HbA1c", "hsCRP", "BMI", "Waist", "Height", "ArmCirc", "HipCirc", "LegLength", "ArmLength", "TroubleSleep", "PhysicalActivity", "Smoke", "Drug", "Diet", "Alcohol", "Work", "MonInc", "Gender", "Age" ], "rows": 2759, "table": true, "tojson": true } ], "_help": [ { "page": "MixMashNet-package", "title": "Tools for Multilayer and Single Layer Network Modeling", "topics": [ "MixMashNet-package", "MixMashNet" ] }, { "page": "bacteremia", "title": "Bacteremia example dataset for single layer network analysis", "topics": [ "bacteremia" ] }, { "page": "bridge_metrics", "title": "Bridge metrics for nodes across communities", "topics": [ "bridge_metrics" ] }, { "page": "bridge_metrics_excluded", "title": "Bridge metrics for nodes excluded from communities", "topics": [ "bridge_metrics_excluded" ] }, { "page": "community_scores", "title": "Compute community scores from a fitted MixMashNet model", "topics": [ "community_scores" ] }, { "page": "find_bridge_communities", "title": "Bridge profiles of a node across communities", "topics": [ "find_bridge_communities" ] }, { "page": "find_bridge_layers", "title": "Bridge profiles of a node across layers", "topics": [ "find_bridge_layers" ] }, { "page": "get_centrality", "title": "Extract node-level centrality indices", "topics": [ "get_centrality", "get_centrality.mixMN_fit", "get_centrality.multimixMN_fit" ] }, { "page": "get_edges", "title": "Extract edge-level summaries", "topics": [ "get_edges", "get_edges.mixMN_fit", "get_edges.multimixMN_fit" ] }, { "page": "layer_slice", "title": "Extract a single layer from a multilayer MixMashNet object", "topics": [ "layer_slice", "layer_slice.multimixMN_fit" ] }, { "page": "membershipStab", "title": "Node stability from bootstrap community assignments", "topics": [ "membershipStab" ] }, { "page": "mixMN", "title": "Estimate single layer MGM network with bootstrap centrality, bridge metrics, clustering, and (optionally) community score loadings", "topics": [ "mixMN" ] }, { "page": "multimixMN", "title": "Multilayer MGM with bootstrap, intra/interlayer metrics, and quantile regions", "topics": [ "multimixMN" ] }, { "page": "nhanes", "title": "NHANES-derived dataset for multilayer network analysis", "topics": [ "nhanes" ] }, { "page": "plot.mixMN_fit", "title": "Plot method for single layer MixMashNet objects", "topics": [ "plot.mixMN_fit" ] }, { "page": "plot.multimixMN_fit", "title": "Plot method for multilayer MixMashNet objects", "topics": [ "plot.multimixMN_fit" ] }, { "page": "print.mixMN_fit", "title": "Print method for single layer MixMashNet objects", "topics": [ "print.mixMN_fit" ] }, { "page": "print.multimixMN_fit", "title": "Print method for multilayer MixMashNet objects", "topics": [ "print.multimixMN_fit" ] }, { "page": "summary.mixMN_fit", "title": "Summarize top intralayer edges for single-layer MixMashNet fits", "topics": [ "summary.mixMN_fit" ] }, { "page": "summary.multimixMN_fit", "title": "Summarize top interlayer edges for multilayer MixMashNet fits", "topics": [ "summary.multimixMN_fit" ] }, { "page": "update_palette", "title": "Update community and layer color palettes in MixMashNet objects", "topics": [ "update_palette", "update_palette.mixMN_fit", "update_palette.multimixMN_fit" ] } ], "_readme": "https://github.com/arcbiostat/mixmashnet/raw/HEAD/README.md", "_rundeps": [ "abind", "backports", "base64enc", "bit", "bit64", "boot", "broom", "bslib", "cachem", "car", "carData", "checkmate", "class", "cli", "clipr", "clue", "cluster", "cocor", "coda", "codetools", "colorspace", "corpcor", "corrplot", "cowplot", "cpp11", "crayon", "data.table", "dendextend", "Deriv", "digest", "doBy", "doParallel", "dplyr", "e1071", "EGAnet", "eigenmodel", "ellipse", "evaluate", "farver", "fastmap", "fdrtool", "fontawesome", "forcats", "foreach", "forecast", "foreign", "Formula", "fracdiff", "fs", "future", "future.apply", "gdata", "generics", "GGally", "ggplot2", "ggpubr", "ggrepel", "ggsci", "ggsignif", "ggstats", "glasso", "glassoFast", "glmnet", "globals", "glue", "GPArotation", "gridExtra", "gtable", "gtools", "haven", "highr", "Hmisc", "hms", "htmlTable", "htmltools", "htmlwidgets", "igraph", "isoband", "iterators", "jomo", "jpeg", "jquerylib", "jsonlite", "knitr", "labeling", "lattice", "lavaan", "lifecycle", "listenv", "lme4", "lmtest", "magrittr", "MASS", "Matrix", "MatrixModels", "memoise", "mgcv", "mgm", "mice", "mime", "minqa", "mitml", "mnormt", "modelr", "network", "networktools", "nlme", "nloptr", "nnet", "nnls", "numDeriv", "ordinal", "pan", "parallelly", "patchwork", "pbapply", "pbivnorm", "pbkrtest", "pillar", "pkgconfig", "plotrix", "plyr", "png", "polynom", "prettyunits", "progress", "progressr", "proxy", "psych", "purrr", "qgraph", "quadprog", "quantreg", "R.methodsS3", "R.oo", "R.utils", "R6", "rappdirs", "rbibutils", "RColorBrewer", "Rcpp", "RcppArmadillo", "RcppEigen", "Rdpack", "readr", "reformulas", "reshape2", "rlang", "rmarkdown", "rpart", "rstatix", "rstudioapi", "S7", "sass", "scales", "semPlot", "shape", "smacof", "sna", "SparseM", "statnet.common", "stringi", "stringr", "survival", "tibble", "tidyr", "tidyselect", "timeDate", "tinytex", "tzdb", "ucminf", "urca", "utf8", "vctrs", "viridis", "viridisLite", "vroom", "weights", "withr", "wordcloud", "xfun", "yaml", "zoo" ], "_score": 4.414973347970818, "_indexed": true, "_nocasepkg": "mixmashnet", "_universes": [ "arcbiostat", "mariadmm96" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.1.0", "date": "2026-10-14T08:51:38.000Z", "distro": "resolute", "commit": "e842da38a3a476fb88bb5361f13b6c85fb2434b0", "fileid": "https://r2.ropensci.org/8f367e6af4cd09b5132c3f756ecf0254e3d5752560c43e5901db1ff55432ac0e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/arcbiostat/actions/runs/38537310877" }, { "r": "4.6.1", "os": "linux", "version": "1.1.0", "date": "2026-10-14T08:51:39.000Z", "distro": "resolute", "commit": "e842da38a3a476fb88bb5361f13b6c85fb2434b0", "fileid": "https://r2.ropensci.org/6740ff7659a5af5cd12236d59d8800372ca8bcf855f08dac8eacc643ddf693a5", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/arcbiostat/actions/runs/38537310877" }, { "r": "4.5.3", "os": "mac", "version": "1.1.0", "date": "2026-10-14T09:38:51.000Z", "commit": "e842da38a3a476fb88bb5361f13b6c85fb2434b0", "fileid": "https://r2.ropensci.org/3f1ed6144b1ae6cb202444f02b16c43402cd1767833e0af2aa27e367be9a3efd", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/arcbiostat/actions/runs/38537310877" }, { "r": "4.6.1", "os": "mac", "version": "1.1.0", "date": "2026-10-14T09:38:14.000Z", "commit": "e842da38a3a476fb88bb5361f13b6c85fb2434b0", "fileid": "https://r2.ropensci.org/e067683126b173008299c622c2a55220a7a1c9616e5d594985b401f65df90060", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/arcbiostat/actions/runs/38537310877" }, { "r": "4.6.0", "os": "wasm", "version": "1.1.0", "date": "2026-10-14T08:51:37.000Z", "commit": "e842da38a3a476fb88bb5361f13b6c85fb2434b0", "fileid": "https://r2.ropensci.org/80faa55e1381961b09f47b9bf02ba801184f60a8164944a8cc16dea3970f0528", "status": "success", "buildurl": "https://github.com/r-universe/arcbiostat/actions/runs/38537310877" }, { "r": "4.7.0", "os": "win", "version": "1.1.0", "date": "2026-10-14T08:50:24.000Z", "commit": "e842da38a3a476fb88bb5361f13b6c85fb2434b0", "fileid": "https://r2.ropensci.org/de06a988c7aa568f130a8d32eeed530470d86b2e5d15ab838c3bcc51780bd67b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/arcbiostat/actions/runs/38537310877" }, { "r": "4.5.3", "os": "win", "version": "1.1.0", "date": "2026-10-14T08:50:09.000Z", "commit": "e842da38a3a476fb88bb5361f13b6c85fb2434b0", "fileid": "https://r2.ropensci.org/51931ef68e0791466b0308386e292ce1d978b43492337e292d1327087769febe", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/arcbiostat/actions/runs/38537310877" }, { "r": "4.6.1", "os": "win", "version": "1.1.0", "date": "2026-10-14T08:50:27.000Z", "commit": "e842da38a3a476fb88bb5361f13b6c85fb2434b0", "fileid": "https://r2.ropensci.org/0b68340039d2e14c086b2b95df85ed7a2ef4a2cc1deaf655fbe57ecaaa5f46dd", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/arcbiostat/actions/runs/38537310877" } ] }